PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016514250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 907aa    MW: 99096.5 Da    PI: 6.786
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016514250.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.5e-19337436198
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k l+ sd+++ grlvlpkk+ae++    +  ++e+  l+++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  XP_016514250.1 337 FEKMLSASDAGRIGRLVLPKKCAEAYfppiS--NPEGLPLKVQDLKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRIE-PE 427
                     89**************************543..556667***************9989999999***9.********************887.56 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     ++lv++ ++
  XP_016514250.1 428 GKLVMGCRK 436
                     656665554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-30333437IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-19334433IPR015300DNA-binding pseudobarrel domain
CDDcd100172.67E-23335436No hitNo description
SMARTSM010197.8E-23337437IPR003340B3 DNA binding domain
PROSITE profilePS5086311.082337438IPR003340B3 DNA binding domain
PfamPF023622.2E-16337436IPR003340B3 DNA binding domain
PROSITE profilePS5105013.676592642IPR011124Zinc finger, CW-type
PfamPF074965.8E-11597639IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MSSSAAPSSA TKVCFNTNCN QFIERPKKGW RRRTGEFADL CDRCASAYDD GKFCETFHLK  60
TSGWRSCESC GKQIHCGCIV SFHTFVLLDA GGIECLSCAR KSFILTPNPA WPPPSLFHPL  120
QPERIKDVNN WNPIAGSGPV PWRQAPSLFN GSAIQNELQP RTPFLDATGS VDRLCLGERP  180
SALSSDNSRK DSCEKLMNGK LKIGVPGTLE NGYAGLNHEE PPKSCISGPP QLSYAKNDLS  240
APSFSLTIGS SCKNEPTDHS KVSISLQQQT TLSTPLGKQL GGHATVDYAG ETQVRNSKTR  300
VDGRGKHHLL PRYWPRITDE ELQQISGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE  360
AYFPPISNPE GLPLKVQDLK GKEWMFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDIVT  420
FSRIEPEGKL VMGCRKASTT LTADQGSEAC SNSNGVVTNG NVNTKSTKFS EEVLANSTKK  480
GFSSTTHVAP ADSTIGWAET KLSDDMAMEF LGNNRSIPCK RKSSTLGSKS KRLRIDNEDL  540
VELKVTVVQA QGLMRPPSSD APTVIVIEGC EFEEYEDAPI IGRPAIPSVD HLGEKIQWVQ  600
CEDCFKWRKV PDSALLPSRW TCSENSWDSE RSVCSADQEL TADHLRDLLP RINKAAKKMK  660
ASKQETDVEA LDGLDALANL AILDEGETLP ASSQATTKHP RHRPGCTCIV CIQPPSGKGP  720
KHKQSCDCIV CKSVKRRFKT LMLKREKKLS EKEAEAACQK LQPQLAGQLL DAGDIQESND  780
DAGHFSPQRG ELNNEGYADD PNYPNEKKSS ALPFKGEIDL NAKPERDDEL SPGSDSGSIM  840
RILQVAAEQY VRHCENGSFT GNHENGDGTG ETNPNNCVIV GGTNQTDVDH NRPLSIGTAA  900
SLAPNDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-1533642313102DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-151HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016514250.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0V0ISF80.0A0A0V0ISF8_SOLCH; Putative B3 domain-containing transcription repressor VAL2-like (Fragment)
STRINGSolyc02g079020.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-150high-level expression of sugar-inducible gene 2